publications
Published a dozen highly influential articles as first author, including Nature Communications, Molecular Biology and Evolution, elife, molecular ecology resource, cell proliferation, and genome biology and evolution. Co-authored in Nature climate change, Nature communication, Nuclear acid research, the ISME, Genome biology and Genomics, Proteomics & Bioinformatics etc.
2024
- RPA and Rad27 limit templated and inverted insertions at DNA breaks (Under review in Nucleic Acids Research)bioRxiv, 2024
- 2’-O-Methylation at internal sites on mRNA promotes mRNA stabilityMolecular Cell, 2024
- Keratin 5 Basal Cells are Temporally Regulated Developmental and Tissue Repair Progenitors in Bladder UrotheliumAm J Physiol Renal Physiol, 2024
2023
- Yeast EndoG prevents genome instability by degrading cytoplasmic DNA (Under review in Nature Communications)bioRxiv, 2023
- Transcriptional inhibition after irradiation occurs preferentially at highly expressed genes in a manner dependent on cell cycle progressionelife, 2023
- mt-Ty 5 tiRNA regulates skeletal muscle cell proliferation and differentiationCell proliferation, 2023
- Epigenetic landscape reveals MECOM as an endothelial lineage regulatornature communications, 2023
2022
- Mutation of mutator genes marks immunotherapy efficacy2022
2021
- The evolution of calcification in reef-building coralsMolecular Biology and Evolution, 2021
- MACMIC reveals a dual role of CTCF in epigenetic regulation of cell identity genesGenomics, Proteomics & Bioinformatics, 2021
2020
- Intergenerational epigenetic inheritance in reef-building coralsNature Climate Change, 2020
- Machine learning uncovers cell identity regulator by histone codeNature communications, 2020
- TADsplimer reveals splits and mergers of topologically associating domains for epigenetic regulation of transcriptionGenome biology, 2020
2018
- Recent expansion of heat-activated retrotransposons in the coral symbiont Symbiodinium microadriaticumThe ISME journal, 2018
- Draft genome of an iconic Red Sea reef fish, the blacktail butterflyfish (Chaetodon austriacus): current status and its characteristicsMolecular ecology resources, 2018
2017
- Draft genomes of the corallimorpharians Amplexidiscus fenestrafer and Discosoma sp.Molecular Ecology Resources, 2017
- Genome-based analyses of six hexacorallian species reject the “naked coral” hypothesisGenome biology and evolution, 2017
- Using a butterflyfish genome as a general tool for RAD-Seq studies in specialized reef fishMolecular ecology resources, 2017
2016
- Information commons for rice (IC4R)Nucleic acids research, 2016
2015
- MicroRNA profiles and potential regulatory pattern during the early stage of spermatogenesis in miceScience China Life Sciences, 2015