publications
Published a dozen highly influential articles as first author, including Nature Communications, Nuclear acid research, Molecular Biology and Evolution, elife, molecular ecology resource, cell proliferation, and genome biology and evolution. Co-authored in Nature climate change, Nature communication, Nuclear acid research, the ISME, Genome biology and Genomics, Proteomics & Bioinformatics etc.
2024
- Insulin receptor orchestrates kidney antibacterial defensesProceedings of the National Academy of Sciences, 2024
- 2′-O-methylation at internal sites on mRNA promotes mRNA stabilityMolecular Cell, 2024
- Yeast EndoG prevents genome instability by degrading extranuclear DNA speciesNature Communications, 2024
- Transcriptional inhibition after irradiation occurs preferentially at highly expressed genes in a manner dependent on cell cycle progressioneLife, 2024
- Genome sequence of the Mediterranean red coral Corallium rubrum2024
- RPA and Rad27 limit templated and inverted insertions at DNA breaksNucleic Acids Research, Dec 2024
- Keratin 5 Basal Cells are Temporally Regulated Developmental and Tissue Repair Progenitors in Bladder UrotheliumAm J Physiol Renal Physiol, Dec 2024
2023
- Spatial Multi-Omic Atlas of Pyelonephritis: TH-OR07Journal of the American Society of Nephrology, Dec 2023
- Obesity Augments Urinary Tract Infection Susceptibility by Activating Focal Adhesion Kinase in Kidney Intercalated Cells: FR-PO372Journal of the American Society of Nephrology, Dec 2023
- mt-Ty 5 tiRNA regulates skeletal muscle cell proliferation and differentiationCell proliferation, Dec 2023
- Epigenetic landscape reveals MECOM as an endothelial lineage regulatornature communications, Dec 2023
2022
- Mutation of mutator genes marks immunotherapy efficacyDec 2022
2021
- The evolution of calcification in reef-building coralsMolecular Biology and Evolution, Dec 2021
- MACMIC reveals a dual role of CTCF in epigenetic regulation of cell identity genesGenomics, Proteomics & Bioinformatics, Dec 2021
2020
- Intergenerational epigenetic inheritance in reef-building coralsNature Climate Change, Dec 2020
- Machine learning uncovers cell identity regulator by histone codeNature communications, Dec 2020
- TADsplimer reveals splits and mergers of topologically associating domains for epigenetic regulation of transcriptionGenome biology, Dec 2020
2018
- Recent expansion of heat-activated retrotransposons in the coral symbiont Symbiodinium microadriaticumThe ISME journal, Dec 2018
- Draft genome of an iconic Red Sea reef fish, the blacktail butterflyfish (Chaetodon austriacus): current status and its characteristicsMolecular ecology resources, Dec 2018
2017
- Draft genomes of the corallimorpharians Amplexidiscus fenestrafer and Discosoma sp.Molecular Ecology Resources, Dec 2017
- Genome-based analyses of six hexacorallian species reject the “naked coral” hypothesisGenome biology and evolution, Dec 2017
- Using a butterflyfish genome as a general tool for RAD-Seq studies in specialized reef fishMolecular ecology resources, Dec 2017
2016
- Information commons for rice (IC4R)Nucleic acids research, Dec 2016
2015
- MicroRNA profiles and potential regulatory pattern during the early stage of spermatogenesis in miceScience China Life Sciences, Dec 2015